Dr Ivo Siekmann

Journal article

Alhassan Y, Siekmann I, Petrovskii S. 2024. Mathematical model of oxygen minimum zones in the vertical distribution of oxygen in the ocean Scientific Reports, 14 DOI Author Url Publisher Url Public Url

Hawker M, Siekmann I. 2024. "People" meet "Markovians" - Individual-based modelling with hybrid stochastic systems Journal of Biological Systems, DOI Publisher Url Public Url

Mitchinson AJ, Pogson M, Czanner G, Conway D, Wilkinson RR, Murphy MF, Siekmann I, Webb SD. 2024. A stochastic model for topographically influenced cell migration Journal of Theoretical Biology, 581 DOI Author Url Publisher Url Public Url

Srisawat K, Stead CA, Hesketh K, Pogson MA, Strauss JA, Cocks MS, Siekmann I, Phillips SM, Lisboa PJ, Shepherd SO, Burniston JG. 2023. People with obesity exhibit losses in muscle proteostasis that are partly improved by exercise training Proteomics, :1-14 DOI Author Url Publisher Url Public Url

Araujo R, Brumley D, Cursons J, Day K, Faria M, Flegg JA, Germano D, Hunt H, Hunter P, Jenner A, Johnston S, McCaw JM, Maini P, Miller C, Muskovic W, Osborne J, Pan M, Rajagopal V, Shahidi N, Siekmann I, Stumpf M, Zanca A. 2023. Frontiers of Mathematical Biology: A workshop honouring Professor Edmund Crampin Mathematical Biosciences, 359 DOI Author Url Publisher Url Public Url

Hoy M, Fritsch S, Bröcker T, Kuhl J, Siekmann I. 2023. A Stochastic Model of Personality Differences Based on PSI Theory Mathematics, 11 :1182 DOI Publisher Url Public Url

Köhnke MC, Siekmann I, Seno H, Malchow H. 2020. A type IV functional response with different shapes in a predator-prey model. Journal of Theoretical Biology, 505 DOI Author Url Publisher Url Public Url

Köhnke MC, Siekmann I, Malchow H. 2020. Taxis-driven pattern formation in a predator-prey model with group defense Ecological Complexity, 43 DOI Author Url Publisher Url Public Url

Siekmann I, Bjelosevic S, Landman K, Monagle P, Ignjatovic V, Crampin EJ. 2019. Mathematical modelling indicates that lower activity of the haemostatic system in neonates is primarily due to lower prothrombin concentration Scientific Reports, 9 DOI Author Url Publisher Url Public Url

Bengfort M, Siekmann I, Malchow H. 2018. Invasive competition with Fokker-Planck diffusion and noise Ecological Complexity, 34 :134-138 DOI Author Url Publisher Url Public Url

Gawthrop PJ, Siekmann I, Kameneva T, Saha S, Ibbotson MR, Crampin EJ. 2017. Bond graph modelling of chemoelectrical energy transduction IET SYSTEMS BIOLOGY, 11 :127-138 DOI Author Url Publisher Url Public Url

Siekmann I. 2017. An applied mathematician's perspective on Rosennean complexity Ecological Complexity, DOI Author Url Publisher Url Public Url

Siekmann I, Bengfort M, Malchow H. 2017. Coexistence of competitors mediated by nonlinear noise European Physical Journal - Special Topics, 226 :2157-2170 DOI Author Url Publisher Url Public Url

Siekmann I, Fackrell M, Crampin EJ, Taylor P. 2016. Modelling modal gating of ion channels with hierarchical Markov models Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 472 DOI Author Url Publisher Url Public Url

Siekmann I, Malchow H. 2016. Fighting Enemies and Noise: Competition of Residents and Invaders in a Stochastically Fluctuating Environment Mathematical Modelling of Natural Phenomena, 11 :137-157 DOI Author Url Publisher Url Public Url

Rajagopal V, Bass G, Walker CG, Crossman DJ, Petzer A, Hickey A, Siekmann I, Hoshijima M, Ellisman MH, Crampin EJ, Soeller C. 2015. Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes PLoS Computational Biology, 11 DOI Author Url Publisher Url Public Url

Siekmann I, Malchow H. 2015. Competition of residents and invaders in a variable environment: Response to enemies and dangerous noise DOI Author Url

Siekmann I, Cao P, Sneyd J, Crampin EJ. 2015. Data-driven modelling of the inositol trisphosphate receptor (IPR) and its role in calcium induced calcium release (CICR) DOI Author Url

Siekmann I. 2015. Bifurcation analysis of individual-based models in population dynamics Ecological Complexity, 21 :177-184 DOI Author Url Publisher Url Public Url

Siekmann I, Sneyd J, Crampin EJ. 2014. Statistical analysis of modal gating in ion channels PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 470 DOI Author Url Publisher Url Public Url

Martin J, Wang X, Simpson C, Siekmann I. 2014. PyTrA: ultra-fast transient absorption data analysis software INTERNATIONAL JOURNAL OF NANOTECHNOLOGY, 11 :601-609 DOI Author Url Publisher Url

Martin J, Wang X, Simpson C, Siekmann I. 2014. PyTrA: Ultra-fast transient absorption data analysis software International Journal of Nanotechnology, 11 :601-609 DOI Publisher Url

Siekmann I. 2013. On competition in ecology, epidemiology and eco-epidemiology ECOLOGICAL COMPLEXITY, 14 :166-179 DOI Author Url Publisher Url

Siekmann I, Sneyd J, Crampin EJ. 2012. MCMC Can Detect Nonidentifiable Models BIOPHYSICAL JOURNAL, 103 :2275-2286 DOI Author Url Publisher Url

Siekmann I, Wagner LE, Yule D, Crampin EJ, Sneyd J. 2012. A Kinetic Model for Type I and II IP3R Accounting for Mode Changes BIOPHYSICAL JOURNAL, 103 :658-668 DOI Author Url Publisher Url

Siekmann I, Wagner LE, Yule D, Fox C, Bryant D, Crampin EJ, Sneyd J. 2011. MCMC Estimation of Markov Models for Ion Channels BIOPHYSICAL JOURNAL, 100 :1919-1929 DOI Author Url Publisher Url

Siekmann I, Malchow H, Venturino E. 2010. On competition of predators and prey infection ECOLOGICAL COMPLEXITY, 7 :446-457 DOI Author Url Publisher Url

Siekmann I, Malchow H, Venturino E. 2008. An extension of the Beretta-Kuang model of viral diseases MATHEMATICAL BIOSCIENCES AND ENGINEERING, 5 :549-565 DOI Author Url Publisher Url

Siekmann I, Malchow H. 2008. Local Collapses in the Truscott-Brindley Model MATHEMATICAL MODELLING OF NATURAL PHENOMENA, 3 :114-130 DOI Author Url Publisher Url

Siekmann I, Malchow H, Venturino E. 2008. Predation may defeat spatial spread of infection Journal of Biological Dynamics, 2 :40-54 DOI Author Url Publisher Url

preprint

Jones M, Lallensack JN, Jarman I, Falkingham P, Siekmann I. 2024. Classification of dinosaur footprints using machine learning Cold Spring Harbor Laboratory DOI Publisher Url

Hawker M, Cao P, Sneyd J, Siekmann I. 2024. A Ca$^{2+}$ puff model based on integrodifferential equations DOI Author Url

Srisawat K, Stead C, Hesketh K, Pogson M, Strauss J, Cocks M, Siekmann I, Phillips S, Lisboa P, Shepherd S, Burniston J. 2023. People with obesity exhibit losses in muscle proteostasis that are partly improved by exercise training Authorea Preprints DOI Publisher Url

Srisawat K, Stead C, Hesketh K, Pogson M, Strauss J, Cocks M, Siekmann I, Phillips S, Lisboa P, Shepherd S, Burniston J. 2023. Muscle of obese insulin-resistant humans exhibits losses in proteostasis and attenuated proteome dynamics that are improved by exercise training bioRxiv DOI Publisher Url

Siekmann I, Bjelosevic S, Landman K, Monagle P, Ignjatovic V, Crampin E. 2018. Mathematical modelling indicates that lower activity of the haemostatic system in neonates is primarily due to lower prothrombin concentration arXiv DOI

Siekmann I. 2017. An applied mathematician's perspective on Rosennean Complexity arXiv DOI

Bengfort M, Siekmann I, Malchow H. 2016. Invasive competition with Fokker-Planck diffusion and noise arXiv DOI

Siekmann I, Fackrell M, Crampin EJ, Taylor P. 2016. Modelling modal gating of ion channels with hierarchical Markov models arXiv DOI

Gawthrop PJ, Siekmann I, Kameneva T, Saha S, Ibbotson MR, Crampin EJ. 2015. Bond Graph Modelling of Chemoelectrical Energy Transduction arXiv DOI

Siekmann I, Bengfort M, Malchow H. Invasion patterns in competitive systems DOI Author Url

Editorial/letter to the editor

Siekmann I, Osborne JM. 2023. Editorial: Do individuals matter? - Individual-based versus population-based models applied to biology and health Frontiers in Applied Mathematics and Statistics, 9 DOI Publisher Url

Chapters

Siekmann I, Cao P, Sneyd J, Crampin EJ. 2019. Data-Driven Modelling of the Inositol Trisphosphate Receptor (IPR) and its Role in Calcium-Induced Calcium Release (CICR) de Pitta M, Berry H. Computational Glioscience Springer DOI Author Url Publisher Url Public Url

Malchow H, Hilker FM, Siekmann I, Petrovskii SV, Medvinsky AB. 2008. Mathematical Models of Pattern Formation in Planktonic Predation-Diffusion Systems: A Review ASPECTS OF MATHEMATICAL MODELLING: APPLICATIONS IN SCIENCE, MEDICINE, ECONOMICS AND MANAGEMENT :1-26 978-3-7643-8590-3 DOI Publisher Url

Conference publication

Siekmann I, Wagner LE, Yule D, Crampin EJ, Sneyd J. 2012. A Park/Drive Model for the Inositol-Trisphosphate Receptor (IPR) BIOPHYSICAL JOURNAL, 56th Annual Meeting of the Biophysical-Society 102 :110A-110A DOI Author Url Publisher Url